Wednesday, February 4, 2026

How Cursor Really Indexes Your Codebase


When you growth environments (IDEs) paired with coding brokers, you will have probably seen code recommendations and edits which are surprisingly correct and related. 

This stage of high quality and precision comes from the brokers being grounded in a deep understanding of your codebase.

Take Cursor for instance. Within the Index & Docs tab, you may see a bit displaying that Cursor has already “ingested” and listed your venture’s codebase:

Indexing & Docs part within the Cursor Settings tab | Picture by writer

So how can we construct a complete understanding of a codebase within the first place? 

At its core, the reply is retrieval-augmented technology (RAG), an idea many readers might already be conversant in. Like most RAG-based programs, these instruments depend on semantic search as a key functionality. 

Reasonably than organizing data purely by uncooked textual content, the codebase is listed and retrieved based mostly on that means. 

This permits natural-language queries to fetch essentially the most related codes, which coding brokers can then use to motive, modify, and generate responses extra successfully.

On this article, we discover the RAG pipeline in Cursor that allows coding brokers to do its work utilizing contextual consciousness of the codebase.

Contents

(1) Exploring the Codebase RAG Pipeline
(2) Protecting Codebase Index As much as Date
(3) Wrapping It Up


(1) Exploring the Codebase RAG Pipeline

Let’s discover the steps in Cursor’s RAG pipeline for indexing and contextualizing codebases:

Step 1 — Chunking

In most RAG pipelines, we first must handle knowledge loading, textual content preprocessing, and doc parsing from a number of sources.

Nonetheless, when working with a codebase, a lot of this effort will be averted. Supply code is already properly structured and cleanly organized inside a venture repo, permitting us to skip the customary doc parsing and transfer straight into chunking.

On this context, the objective of chunking is to interrupt code into significant, semantically coherent models (e.g., features, courses, and logical code blocks) moderately than splitting code textual content arbitrarily. 

Semantic code chunking ensures that every chunk captures the essence of a specific code part, resulting in extra correct retrieval and helpful technology downstream.

To make this extra concrete, let’s have a look at how code chunking works. Take into account the next instance Python script (don’t fear about what the code does; the main target right here is on its construction):

After making use of code chunking, the script is cleanly divided into 4 structurally significant and coherent chunks:

As you may see, the chunks are significant and contextually related as a result of they respect code semantics. In different phrases, chunking avoids splitting code in the midst of a logical block except required by measurement constraints. 

In apply, it means chunk splits are usually created between features moderately than inside them, and between statements moderately than mid-line.

For the instance above, I used Chonkie, a light-weight open-source framework designed particularly for code chunking. It supplies a easy and sensible approach to implement code chunking, amongst many different chunking methods obtainable.


[Optional Reading] Below the Hood of Code Chunking

The code chunking above just isn’t unintended, neither is it achieved by naively splitting code utilizing character counts or common expressions. 

It begins with an understanding of the code’s syntax. The method usually begins through the use of a supply code parser (reminiscent of tree-sitter) to transform the uncooked code into an summary syntax tree (AST).

An summary syntax tree is basically a tree-shaped illustration of code that captures its construction, and never the precise textual content. As an alternative of seeing code as a string, the system now sees it as logical models of code like features, courses, strategies, and blocks.

Take into account the next line of Python code:

x = a + b

Reasonably than being handled as plain textual content, the code is transformed right into a conceptual construction like this:

Project
├── Variable(x)
└── BinaryExpression(+)
├── Variable(a)
└── Variable(b)

This structural understanding is what permits efficient code chunking.

Every significant code assemble, reminiscent of a operate, block, or assertion, is represented as a node within the syntax tree

Pattern illustration of a easy summary syntax tree | Picture by writer

As an alternative of working on uncooked textual content, the chunking works instantly on the syntax tree. 

The chunker will traverse these nodes and teams adjoining ones collectively till a token restrict is reached, producing chunks which are semantically coherent and size-bounded.

Right here is an instance of a barely extra difficult code and the corresponding summary syntax tree:

whereas b != 0:
    if a > b:
        a := a - b
    else:
        b := b - a
return 
Instance of summary syntax free | Picture used underneath Artistic Commons

Step 2 — Producing Embeddings and Metadata

As soon as the chunks are ready, an embedding mannequin is utilized to generate a vector illustration (aka embeddings) for every code chunk. 

These embeddings seize the semantic that means of the code, enabling retrieval for consumer queries and technology prompts to be matched with semantically associated code, even when precise key phrases don’t overlap. 

This considerably improves retrieval high quality for duties reminiscent of code understanding, refactoring, and debugging.

Past producing embeddings, one other vital step is enriching every chunk with related metadata. 

For instance, metadata such because the file path and the corresponding code line vary for every chunk is saved alongside its embedding vector.

This metadata not solely supplies necessary context about the place a bit comes from, but additionally permits metadata-based key phrase filtering throughout retrieval.


Step 3 — Enhancing Knowledge Privateness

As with every RAG-based system, knowledge privateness is a main concern. This naturally raises the query of whether or not file paths themselves might comprise delicate info.

In apply, file and listing names usually reveal greater than anticipated, reminiscent of inner venture constructions, product codenames, consumer identifiers, or possession boundaries inside a codebase. 

In consequence, file paths are handled as delicate metadata and require cautious dealing with.

To deal with this, Cursor applies file path obfuscation (aka path masking) on the consumer facet earlier than any knowledge is transmitted. Every part of the trail, break up by / and ., is masked utilizing a secret key and a small fastened nonce. 

This strategy hides the precise file and folder names whereas preserving sufficient listing construction to help efficient retrieval and filtering.

For instance, src/funds/invoice_processor.py could also be reworked into a9f3/x72k/qp1m8d.f4.

Be aware: Customers can management which components of their codebase are shared with Cursor by using a .cursorignore file. Cursor makes a finest effort to stop the listed content material from being transmitted or referenced in LLM requests.


Step 4— Storing Embeddings

As soon as generated, the chunk embeddings (with the corresponding metadata) are saved in a vector database utilizing Turbopuffer, which is optimized for quick semantic search throughout hundreds of thousands of code chunks.

Turbopuffer is a serverless, high-performance search engine that mixes vector and full-text search and is backed by low-cost object storage.

To hurry up re-indexing, embeddings are additionally cached in AWS and keyed by the hash of every chunk, permitting unchanged code to be reused throughout subsequent indexing execution.

From an information privateness perspective, you will need to observe that solely embeddings and metadata are saved within the cloud. It signifies that our unique supply code stays on our native machine and is by no means saved on Cursor servers or in Turbopuffer.


Step 5 — Operating Semantic Search

After we submit a question in Cursor, it’s first transformed right into a vector utilizing the identical embedding mannequin for the chunk embeddings technology. It ensures that each queries and code chunks dwell in the identical semantic area.

From the angle of semantic search, the method unfolds as follows:

  1. Cursor compares the question embedding in opposition to code embeddings within the vector database to determine essentially the most semantically comparable code chunks.
  2. These candidate chunks are returned by Turbopuffer in ranked order based mostly on their similarity scores.
  3. Since uncooked supply code isn’t saved within the cloud or the vector database, the search outcomes consist solely of metadata, particularly the masked file paths and corresponding code line ranges.
  4. By resolving the metadata of decrypted file paths and line ranges, the native consumer is then in a position to retrieve the precise code chunks from the native codebase.
  5. The retrieved code chunks, in its unique textual content type, are then supplied as context alongside the question to the LLM to generate a context-aware response.

As a part of a hybrid search (semantic + key phrase) technique, the coding agent may also use instruments reminiscent of grep and ripgrep to find code snippets based mostly on precise string matches.

OpenCode is a well-liked open-source coding agent framework obtainable within the terminal, IDEs, and desktop environments.

Not like Cursor, it really works instantly on the codebase utilizing textual content search, file matching, and LSP-based navigation moderately than embedding-based semantic search. 

In consequence, OpenCode supplies sturdy structural consciousness however lacks the deeper semantic retrieval capabilities present in Cursor.

As a reminder, our unique supply code is not saved on Cursor servers or in Turbopuffer. 

Nonetheless, when answering a question, Cursor nonetheless must quickly cross the related unique code chunks to the coding agent so it could produce an correct response. 

It is because the chunk embeddings can’t be used to instantly reconstruct the unique code. 

Plain textual content code is retrieved solely at inference time and just for the precise recordsdata and contours wanted. Exterior of this short-lived inference runtime, the codebase just isn’t saved or continued remotely.


(2) Protecting Codebase Index As much as Date

Overview

Our codebase evolves shortly as we both settle for the agent-generated edits or as we make guide code adjustments.

To maintain semantic retrieval correct, Cursor mechanically synchronizes the code index by way of periodic checks, usually each 5 minutes.

Throughout every sync, the system securely detects adjustments and refreshes solely the affected recordsdata by eradicating outdated embeddings and producing new ones. 

As well as, recordsdata are processed in batches to optimize efficiency and reduce disruption to our growth workflow.

Utilizing Merkle Bushes

So how does Cursor make this work so seamlessly? It scans the opened folder and computes a Merkle tree of file hashes, which permits the system to effectively detect and monitor adjustments throughout the codebase.

Alright, so what’s a Merkle tree?

It’s a knowledge construction that works like a system of digital cryptographic fingerprints, permitting adjustments throughout a big set of recordsdata to be tracked effectively. 

Every code file is transformed into a brief fingerprint, and these fingerprints are mixed hierarchically right into a single top-level fingerprint that represents the complete folder.

When a file adjustments, solely its fingerprint and a small variety of associated fingerprints should be up to date.

Illustration of a Merkle tree | Picture used underneath Artistic Commons

The Merkle tree of the codebase is synced to the Cursor server, which periodically checks for fingerprint mismatches to determine what has modified. 

In consequence, it could pinpoint which recordsdata had been modified and replace solely these recordsdata throughout index synchronization, holding the method quick and environment friendly.

Dealing with Completely different File Sorts

Right here is how Cursor effectively handles completely different file varieties as a part of the indexing course of:

  • New recordsdata: Robotically added to index
  • Modified recordsdata: Previous embeddings eliminated, recent ones created
  • Deleted recordsdata: Promptly faraway from index
  • Massive/advanced recordsdata: Could also be skipped for efficiency

Be aware: Cursor’s codebase indexing begins mechanically everytime you open a workspace.


(3) Wrapping It Up

On this article, we appeared past LLM technology to discover the pipeline behind instruments like Cursor that builds the precise context by way of RAG. 

By chunking code alongside significant boundaries, indexing it effectively, and constantly refreshing that context because the codebase evolves, coding brokers are in a position to ship much more related and dependable recommendations.

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